BiobaseXNA: Efficient RNA/DNA representations

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

Modules

For package maintainers and hackage trustees

Candidates

Versions [RSS]	0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0, 0.11.0.0, 0.11.1.0, 0.11.1.1 (info)
Change log	changelog
Dependencies	base (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (>=0.1.2), file-embed (>=0.0.4.7), mtl (>=2.1), primitive (>=0.5), PrimitiveArray (>=0.5.4), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10) [details]
License	GPL-3.0-only
Copyright	Christian Hoener zu Siederdissen, 2011-2013
Author	Christian Hoener zu Siederdissen
Maintainer	choener@tbi.univie.ac.at
Category	Bioinformatics
Home page	http://www.tbi.univie.ac.at/~choener/
Source repo	head: git clone git://github.com/choener/BiobaseXNA
Uploaded	by ChristianHoener at 2014-03-05T21:41:49Z
Distributions
Reverse Dependencies	17 direct, 2 indirect [details]
Executables	SubOptDistance
Downloads	31640 total (41 in the last 30 days)
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