BiobaseXNA: Efficient RNA/DNA representations

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

doi:10.1093nargkp011

Changes since 0.5.4.0

• tuple-like updating (updL, updR, updP, updT)

• baseP pair selection

• isostericity data, loaded from csv files

Changes since 0.5.3.0

• tuple-like (selN) selection of basepairing elements (baseL,baseR,baseT)

Changes since 0.5.1.0

• bonusTable for constrained folding

Modules

[Index]

Downloads

• BiobaseXNA-0.5.5.0.tar.gz [browse] (Cabal source package)
• Package description (as included in the package)

Maintainer's Corner

Package maintainers

• ChristianHoener

For package maintainers and hackage trustees

• edit package information

Candidates

• No Candidates