BiobaseXNA: Efficient RNA/DNA representations
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.
Contains data from:
Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)
http://dx.crossref.org/10.1093%2Fnar%2Fgkp011
New in 0.6.2.0
Updated to PrimitiveArray >= 0.2.0.0
Modules
[Index]
Downloads
- BiobaseXNA-0.6.2.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0, 0.11.0.0, 0.11.1.0, 0.11.1.1 (info) |
|---|---|
| Dependencies | base (>3 && <5), bytestring, containers, csv, file-embed, primitive, PrimitiveArray (==0.2.1.1), text, tuple, vector (>=0.9 && <0.10) [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2011-2012 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Uploaded | by ChristianHoener at 2012-03-06T17:17:59Z |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Source repo | head: git clone git://github.com/choener/BiobaseXNA |
| Distributions | |
| Reverse Dependencies | 17 direct, 2 indirect [details] |
| Downloads | 32384 total (82 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs uploaded by user Build status unknown [no reports yet] |