hPDB-examples: Parser, print and manipulate structures in PDB file format.
Protein Data Bank file format is a most popular format for holding biomolecule data. This is a very fast parser (below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter.) It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.
Downloads
- hPDB-examples-0.99.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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For package maintainers and hackage trustees
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| Versions [RSS] | 0.99, 0.999, 0.9999, 1.0, 1.1, 1.1.1, 1.1.2, 1.2.0.1, 1.2.0.2, 1.2.0.6, 1.2.0.7, 1.2.0.8, 1.5.0.0 |
|---|---|
| Dependencies | AC-Vector, base (>=4.0 && <4.7), bytestring, containers, deepseq, directory, ghc-prim, GLUT, hPDB (>=0.99), mtl, Octree (>=0.5), OpenGL, QuickCheck (>=2.5.0.0), template-haskell, text (>=0.11.1.13), text-format, vector [details] |
| Tested with | ghc ==7.4.1, ghc ==7.0.3, ghc ==7.4.2 |
| License | BSD-3-Clause |
| Copyright | Copyright by Michal J. Gajda '2009-'2012 |
| Author | Michal J. Gajda |
| Maintainer | mjgajda@googlemail.com |
| Category | Bioinformatics |
| Home page | https://github.com/mgajda/hpdb |
| Bug tracker | mailto:mjgajda@googlemail.com |
| Source repo | head: git clone git://github.com:mgajda/hpdb-examples.git |
| Uploaded | by MichalGajda at 2013-07-07T18:17:36Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | Viewer, StericClashCheck, Rg, PrintStructureObject, PrintEvents, CanonicalAxes, SplitModels, CleanPDB, ShiftToCenter, PDB2Fasta |
| Downloads | 10115 total (3 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs not available [build log] All reported builds failed as of 2016-12-20 [all 8 reports] |