| addPerson | Epidemic.Types.Population |
| allEvents | |
| 1 (Function) | Epidemic.InhomogeneousBDS |
| 2 (Function) | Epidemic.InhomogeneousBD |
| 3 (Function) | Epidemic.BirthDeathSamplingOccurrence |
| 4 (Function) | Epidemic.BirthDeathSamplingCatastropheOccurrence |
| 5 (Function) | Epidemic.BirthDeathSampling |
| 6 (Function) | Epidemic.BirthDeath |
| 7 (Function) | Epidemic.BDSCOD |
| asNewickString | Epidemic.Types.Events |
| asPeople | Epidemic.Types.Population |
| asTimed | Epidemic.Types.Parameter |
| birthProb | Epidemic |
| Branch | Epidemic.Types.Events |
| cadlagValue | Epidemic.Types.Parameter |
| cadlagValue' | Epidemic.Types.Parameter |
| Catastrophe | Epidemic.Types.Events |
| configuration | |
| 1 (Function) | Epidemic.InhomogeneousBDS |
| 2 (Function) | Epidemic.InhomogeneousBD |
| 3 (Function) | Epidemic.BirthDeathSamplingOccurrence |
| 4 (Function) | Epidemic.BirthDeathSamplingCatastropheOccurrence |
| 5 (Function) | Epidemic.BirthDeathSampling |
| 6 (Function) | Epidemic.BirthDeath |
| 7 (Function) | Epidemic.BDSCOD |
| count' | Epidemic.Utility |
| derivedFrom | Epidemic.Types.Events |
| diracDeltaValue | Epidemic.Types.Parameter |
| diracDeltaValue' | Epidemic.Types.Parameter |
| Disaster | Epidemic.Types.Events |
| EpidemicEvent | Epidemic.Types.Events |
| EpidemicTree | Epidemic.Types.Events |
| eventPopDelta | Epidemic |
| eventRate | Epidemic |
| eventTime | Epidemic.Types.Events |
| finalSize | Epidemic.Utility |
| firstScheduled | Epidemic |
| hasDescendentWhich | Epidemic |
| hasSampledDescendent | Epidemic |
| hasSampledLeaf | Epidemic |
| hasTime | Epidemic.Types.Parameter |
| hasTime' | Epidemic.Types.Parameter |
| haveCommonPeople | Epidemic.Types.Population |
| includesPerson | Epidemic.Types.Population |
| infected | Epidemic |
| infectedBy | Epidemic |
| Infection | Epidemic.Types.Events |
| infectiousPeople | Epidemic |
| inhomBDSRates | Epidemic.InhomogeneousBDS |
| inhomExponential | Epidemic.Utility |
| initialIdentifier | Epidemic.Utility |
| isAscending | Epidemic.Types.Parameter |
| isInfected | Epidemic |
| isNonReconTreeObservation | Epidemic.Utility |
| isReconTreeLeaf | Epidemic.Utility |
| Leaf | Epidemic.Types.Events |
| maybeEpidemicTree | Epidemic.Types.Events |
| maybeReconstructedTree | Epidemic.Types.Events |
| ModelParameters | Epidemic |
| NBranch | |
| 1 (Type/Class) | Epidemic.Utility |
| 2 (Data Constructor) | Epidemic.Utility |
| NBranchSet | |
| 1 (Type/Class) | Epidemic.Utility |
| 2 (Data Constructor) | Epidemic.Utility |
| Newick | Epidemic.Types.Events |
| newickBranch | Epidemic.Utility |
| newickBranchSet | Epidemic.Utility |
| newickInternal | Epidemic.Utility |
| newickLeaf | Epidemic.Utility |
| newickLength | Epidemic.Utility |
| newickName | Epidemic.Utility |
| newickSubtree | Epidemic.Utility |
| newickTree | Epidemic.Utility |
| newIdentifier | Epidemic.Utility |
| newPerson | Epidemic.Utility |
| nextTime | Epidemic.Types.Parameter |
| nextTime' | Epidemic.Types.Parameter |
| NInternal | Epidemic.Utility |
| NLeaf | Epidemic.Utility |
| NLength | Epidemic.Utility |
| NName | Epidemic.Utility |
| noScheduledEvent | Epidemic |
| NSubtree | Epidemic.Utility |
| NTree | |
| 1 (Type/Class) | Epidemic.Utility |
| 2 (Data Constructor) | Epidemic.Utility |
| nullPeople | Epidemic.Types.Population |
| numPeople | Epidemic.Types.Population |
| observedEvents | |
| 1 (Function) | Epidemic.InhomogeneousBDS |
| 2 (Function) | Epidemic.BirthDeathSamplingOccurrence |
| 3 (Function) | Epidemic.BirthDeathSamplingCatastropheOccurrence |
| 4 (Function) | Epidemic.BDSCOD |
| Occurrence | Epidemic.Types.Events |
| People | |
| 1 (Type/Class) | Epidemic.Types.Population |
| 2 (Data Constructor) | Epidemic.Types.Population |
| peopleInEvents | Epidemic |
| Person | |
| 1 (Type/Class) | Epidemic.Types.Population |
| 2 (Data Constructor) | Epidemic.Types.Population |
| personByteString | Epidemic.Types.Population |
| personsInEvent | Epidemic |
| PointProcessEvents | |
| 1 (Type/Class) | Epidemic.Types.Events |
| 2 (Data Constructor) | Epidemic.Types.Events |
| pointProcessEvents | Epidemic.Types.Events |
| Population | Epidemic |
| population | Epidemic.Utility |
| Probability | Epidemic.Types.Parameter |
| randInhomExp | Epidemic.Utility |
| randomPerson | Epidemic.Utility |
| Rate | Epidemic.Types.Parameter |
| rates | Epidemic.Utility |
| RBranch | Epidemic.Types.Events |
| ReconstructedTree | Epidemic.Types.Events |
| Removal | Epidemic.Types.Events |
| removedPeople | Epidemic |
| removePerson | Epidemic.Types.Population |
| RLeaf | Epidemic.Types.Events |
| rNaught | Epidemic |
| SampleTree | Epidemic |
| sampleTree | Epidemic |
| sampleTreeEvents | Epidemic |
| sampleTreeEvents' | Epidemic |
| Sampling | Epidemic.Types.Events |
| samplingEvent | Epidemic |
| selectElem | Epidemic.Utility |
| Shoot | Epidemic.Types.Events |
| simulation | Epidemic.Utility |
| simulation' | Epidemic.Utility |
| SimulationConfiguration | |
| 1 (Type/Class) | Epidemic.Utility |
| 2 (Data Constructor) | Epidemic.Utility |
| simulationWithSystemRandom | Epidemic.Utility |
| sort | Epidemic.Utility |
| STBirth | Epidemic |
| STDeath | Epidemic |
| susceptiblePeople | Epidemic |
| Time | Epidemic.Types.Parameter |
| Timed | |
| 1 (Type/Class) | Epidemic.Types.Parameter |
| 2 (Data Constructor) | Epidemic.Types.Parameter |
| timeLimit | Epidemic.Utility |
| TransmissionTree | Epidemic |
| transmissionTree | Epidemic |
| TTBirth | Epidemic |
| TTDeath | Epidemic |
| TTUnresolved | Epidemic |
| wasSampled | Epidemic |