diversity: Return the diversity at each position for all sequences in a fasta file
Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.
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- diversity-0.6.2.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0 (info) |
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| Dependencies | base (>=4.6 && <4.9), containers (>=0.5 && <0.6), data-ordlist (>=0.4 && <0.5), diversity, fasta (>=0.7 && <0.8), math-functions (>=0.1 && <0.2), MonadRandom (>=0.3 && <0.4), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), pipes (>=4.1 && <4.2), random-shuffle (>=0.0 && <0.1), scientific (>=0.3 && <0.4), split (>=0.2 && <0.3) [details] |
| License | GPL-2.0-only |
| Author | Gregory W. Schwartz |
| Maintainer | gregory.schwartz@drexel.edu |
| Category | Bioinformatics |
| Home page | https://github.com/GregorySchwartz/diversity |
| Uploaded | by GregorySchwartz at 2015-05-13T16:18:47Z |
| Distributions | NixOS:0.8.1.0 |
| Reverse Dependencies | 3 direct, 0 indirect [details] |
| Executables | diversity |
| Downloads | 18850 total (27 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs available [build log] Last success reported on 2015-05-13 [all 1 reports] |