BiobaseTrainingData: RNA folding training data
Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common "training data" format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just "cat" together different training files.
Note that several features are designed around extended RNA secondary structures.
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- BiobaseTrainingData-0.1.0.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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Versions [RSS] | 0.1.0.0, 0.1.1.0, 0.1.2.0, 0.1.2.2, 0.1.2.3 |
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Dependencies | base (>3 && <5), BiobaseDotP, BiobaseFR3D, BiobaseXNA (>=0.5.0.1), bytestring, cmdargs (>=0.7 && <0.8), iteratee [details] |
License | GPL-3.0-only |
Copyright | Christian Hoener zu Siederdissen, 2011 |
Author | Christian Hoener zu Siederdissen |
Maintainer | choener@tbi.univie.ac.at |
Category | Bioinformatics |
Home page | http://www.tbi.univie.ac.at/~choener/ |
Uploaded | by ChristianHoener at 2011-08-22T15:29:41Z |
Distributions | |
Reverse Dependencies | 2 direct, 0 indirect [details] |
Executables | MkTrainingData |
Downloads | 5176 total (7 in the last 30 days) |
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Status | Docs uploaded by user Build status unknown [no reports yet] |